Analyses associated with the decontam R package manuscript

Classification of sequence variants by decontam is consistent with expectations based on prior evidence in the human oral microbiome.

Removing contaminants removes kit and sequence-center effecst in a dilution series experiment.

Looking for evidence of a placenta microbiome not explained by contaminants in negative controls.

Contaminants in exploratory analysis of associations between low-frequency taxa and preterm birth.

R markdown generating each analysis is available as part of the github repository associated with this web page, as well as all required input data.